The Role of the Vaginal Microbiome in Pregnancy and Miscarriage
Approximately 15% of clinically recognized pregnancies end in miscarriage. While chromosomal abnormalities account for nearly half of these cases, the remaining causes have largely remained unclear. Emerging research suggests that the vaginal microbiome may play a critical role in pregnancy outcomes, with a balanced microbiome potentially reducing miscarriage risk, especially in the first trimester.


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10 min
Trying to Conceive
Article
Vaginal Dysbiosis and Its Impact on Reproductive Health
An imbalanced vaginal microbiome, known as vaginal dysbiosis, has been linked to several reproductive challenges, including:
- Miscarriage
- Preterm birth
- Unexplained infertility
- Reduced IVF success
What is the Vaginal Microbiome?
The vaginal microbiome consists of various microorganisms, including bacteria, fungi, viruses, yeast, and archaea. Among these, Lactobacilli play a crucial role in maintaining vaginal health. They produce lactic acid and hydrogen peroxide, creating an acidic environment (pH 3.8–4.5) that inhibits harmful pathogens such as E. coli, Staphylococcus, and Candida. This protective function helps prevent infections like bacterial vaginosis (BV) and thrush.
Vaginal Microbiome Types
Vaginal microbiomes are classified into five community state types (CSTs):
- CST 1 – Dominated by Lactobacillus crispatus (highly protective)
- CST 2 – Dominated by Lactobacillus gasseri (protective)
- CST 3 – Dominated by Lactobacillus iners (neutral, may be protective or disruptive)
- CST 4 – Lacking dominant Lactobacillus species (typically disruptive)
- CST 5 – Dominated by Lactobacillus jensenii (protective)
A balanced microbiome generally consists of at least 95% beneficial bacteria. Instead of merely detecting bacterial presence, advanced testing methods evaluate relative proportions to assess overall microbial health.
Factors Affecting the Vaginal Microbiome
Several factors influence microbial balance, including:
- Hormonal fluctuations (menstrual cycle, pregnancy, menopause)
- Diet and nutrition
- Lifestyle choices (contraception, hygiene, sexual habits)
- Infections and medical treatments
- Probiotic use
- Genetic predisposition
The good news is that the vaginal microbiome can be modified through targeted interventions, improving reproductive health and pregnancy outcomes.
How Does the Vaginal Microbiome Influence Pregnancy and Miscarriage?
- Lactobacillus Levels
- Research shows that pregnancies with high Lactobacillus abundance and low bacterial diversity are more likely to be healthy. A robust Lactobacillus-rich environment reduces infection risk and supports immune regulation, both of which play key roles in preventing miscarriage.
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Bacterial Diversity Higher microbial diversity in the vaginal ecosystem has been associated with an increased risk of pregnancy complications, including early miscarriage and preterm birth.
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Presence of Specific Bacteria Certain bacterial species are linked to higher miscarriage rates, including:
- Group B Streptococcus
- Atopobium, Prevotella, Ureaplasma
- Immune System Regulation
- The vaginal microbiome directly influences immune function in the reproductive tract. A disrupted microbiome can lead to inflammation and infections, which are known contributors to pregnancy loss. Because the microbiome is a modifiable factor, targeted interventions may help reduce miscarriage risk.

How Can You Assess Your Vaginal Microbiome?
Testing your microbiome is the first step in identifying potential imbalances. There are three primary testing methods:
- Vaginal Culture Test
- Identifies specific bacterial strains
- Limited to bacteria that grow on culture media
- Does not measure relative bacterial abundance
- PCR Test
- Detects a selected panel of bacteria
- More accurate than culture tests
- Next-Generation Sequencing (NGS) with ScreenMe
- Screens 100% of bacteria and yeast with 99.9% accuracy
- Provides a complete ecosystem profile
- Measures the relative abundance of each species
Can You Restore Vaginal Microbiome Balance?
- Yes, the vaginal microbiome can be improved through targeted strategies. After identifying imbalances, adjustments can be made through:
- Probiotic supplements (targeting Lactobacillus species)
- Nutritional support (foods like ginger, yogurt, and sauerkraut)
- Lifestyle changes (avoiding douching, wearing breathable cotton underwear, urinating after sex)
Conclusion
The vaginal microbiome is gaining recognition for its vital role in fertility and pregnancy outcomes. By protecting against infections, regulating inflammation, and supporting immune function, a well-balanced microbiome may help reduce miscarriage risk. While research is ongoing, testing and targeted interventions provide promising ways to optimize reproductive health.

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